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"kidney_failure_risk", "kyn_trp_ratio", "lipid_markers", "liver_fat_markers", "liver_markers", "marker_summary", "mdq_score", "metabolic_markers", "metabolic_risk_features", "metss", "nfl_marker", "normalize_vec", "nutrient_markers", "obesity_indices", "ogtt_is", "oxidative_markers", "phq9_score", "plot_frailty_age", "psych_dx_flags", "psych_markers", "psych_med_flags", "pulmo_markers", "renal_markers", "saliva_markers", "sarc_f_score", "spirometry_markers", "spq_score", "sweat_markers", "tracer_dxa_is", "urine_markers", "validate_inputs", "vitamin_d_status", "vitamin_markers", "who5_score" ], "_help": [ { "page": "adipo_is", "title": "Adipose insulin sensitivity indices (QUICKI, VAI, LAP, TyG, TG/HDL, Belfiore)", "topics": [ "adipo_is" ] }, { "page": "adiposity_sds", "title": "Calculate standardized scores (SDS) for adiposity measures", "topics": [ "adiposity_sds" ] }, { "page": "adiposity_sds_strat", "title": "Compute sex-stratified standardized scores (SDS) for adiposity measures", "topics": [ "adiposity_sds_strat" ] }, { "page": "all_health_markers", "title": "Compute all available HealthMarkers categories", "topics": [ "all_health_markers" ] }, { "page": "all_insulin_indices", "title": "Compute insulin sensitivity/resistance panels (fasting, OGTT, adipose, tracer/DXA)", "topics": [ "all_insulin_indices" ] }, { "page": "allostatic_load", "title": "Allostatic Load Index", "topics": [ "allostatic_load" ] }, { "page": "alm_bmi_index", "title": "Appendicular Lean Mass to BMI Index", "topics": [ "alm_bmi_index" ] }, { "page": "asrs_score", "title": "Adult ADHD Self-Report Scale scoring", "topics": [ "asrs_score" ] }, { "page": "atherogenic_indices", "title": "Compute atherogenic indices", "topics": [ "atherogenic_indices" ] }, { "page": "bis_score", "title": "Barratt Impulsiveness Scale (key-driven)", "topics": [ "bis_score" ] }, { "page": "bode_index", "title": "BODE Index (BMI, Obstruction, Dyspnea, Exercise capacity)", "topics": [ "bode_index" ] }, { "page": "bone_markers", "title": "Compute Bone Health & Body-Composition Markers (HM-CS v3)", "topics": [ "bone_markers" ] }, { "page": "calc_sds", "title": "Calculate Standard Deviation Scores (SDS; z-scores) for health markers", "topics": [ "calc_sds" ] }, { "page": "charlson_index", "title": "Charlson Comorbidity Index (CCI)", "topics": [ "charlson_index" ] }, { "page": "ckd_stage", "title": "CKD staging (GFR and albuminuria) and KDIGO risk", "topics": [ "ckd_stage" ] }, { "page": "cognitive_score", "title": "Cognitive composite (z-mean or PCA1)", "topics": [ "cognitive_score" ] }, { "page": "corrected_calcium", "title": "Albumin-Corrected Calcium", "topics": [ "corrected_calcium" ] }, { "page": "cvd_marker_aip", "title": "Atherogenic Index of Plasma (AIP)", "topics": [ "cvd_marker_aip" ] }, { "page": "cvd_marker_ldl_particle_number", "title": "LDL Particle Number Estimate (via ApoB)", "topics": [ "cvd_marker_ldl_particle_number" ] }, { "page": "cvd_risk", "title": "Compute cardiovascular risk or marker by selected model", "topics": [ "cvd_risk" ] }, { "page": "cvd_risk_ascvd", "title": "ASCVD risk (ACC/AHA Pooled Cohort Equations)", "topics": [ "cvd_risk_ascvd" ] }, { "page": "cvd_risk_qrisk3", "title": "QRISK3 10-year risk (UK QRISK3-2017)", "topics": [ "cvd_risk_qrisk3" ] }, { "page": "cvd_risk_scorescvd", "title": "RiskScorescvd calculator", "topics": [ "cvd_risk_scorescvd" ] }, { "page": "cvd_risk_stroke", "title": "Stroke 10-year risk", "topics": [ "cvd_risk_stroke" ] }, { "page": "fasting_is", "title": "Calculate fasting-based insulin sensitivity indices", "topics": [ "fasting_is" ] }, { "page": "frailty_index", "title": "Compute Frailty (Deficit) Index using di::di with QA and verbose summaries", "topics": [ "frailty_index" ] }, { "page": "frax_score", "title": "FRAX 10-Year Fracture Risk Score (simplified placeholder)", "topics": [ "frax_score" ] }, { "page": "gad7_score", "title": "GAD-7 scoring", "topics": [ "gad7_score" ] }, { "page": "ghq12_score", "title": 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"title": "Impute missing values via random forest (missForest)", "topics": [ "impute_missforest" ] }, { "page": "impute_missing", "title": "Impute missing values in a data.frame or tibble (simple, column-wise)", "topics": [ "impute_missing" ] }, { "page": "inflammatory_markers", "title": "Compute inflammatory indices (classic, eosinophil, or both)", "topics": [ "inflammatory_markers" ] }, { "page": "isi_score", "title": "Insomnia Severity Index (ISI) scoring", "topics": [ "isi_score" ] }, { "page": "k10_score", "title": "K10 scoring", "topics": [ "k10_score" ] }, { "page": "k6_score", "title": "K6 scoring", "topics": [ "k6_score" ] }, { "page": "kidney_failure_risk", "title": "Kidney Failure Risk Equation (KFRE, 2- and 5-year risk)", "topics": [ "kidney_failure_risk" ] }, { "page": "kyn_trp_ratio", "title": "Kynurenine/Tryptophan Ratio (KTR)", "topics": [ "kyn_trp_ratio" ] }, { "page": "lipid_markers", "title": "Calculate lipid-panel markers, Visceral Adiposity Index (VAI), Lipid Accumulation Product (LAP), and TyG-BMI index", "topics": [ "lipid_markers" ] }, { "page": "liver_fat_markers", "title": "Liver fat surrogates: HSI and NAFLD Liver Fat Score", "topics": [ "liver_fat_markers" ] }, { "page": "liver_markers", "title": "Compute liver-related indices (FLI, NFS, APRI, FIB-4, BARD, ALBI, MELD-XI) with validation and diagnostics", "topics": [ "liver_markers" ] }, { "page": "marker_summary", "title": "Summarize marker outputs", "topics": [ "marker_summary" ] }, { "page": "mdq_score", "title": "Mood Disorder Questionnaire scoring", "topics": [ "mdq_score" ] }, { "page": "metabolic_markers", "title": "Aggregate selected metabolic marker groups", "topics": [ "metabolic_markers" ] }, { "page": "metabolic_risk_features", "title": "Calculate metabolic risk feature flags (pediatric-friendly thresholds)", "topics": [ "metabolic_risk_features" ] }, { "page": "metss", "title": "Metabolic Syndrome Severity Score (MetSSS)", "topics": [ "metss" ] }, { "page": "nfl_marker", "title": "Neurofilament Light Chain (NfL) Biomarker", "topics": [ "nfl_marker" ] }, { "page": "normalize_vec", "title": "Normalize a numeric vector", "topics": [ "normalize_vec" ] }, { "page": "nutrient_markers", "title": "Compute a Suite of Nutrient-Based Health Markers", "topics": [ "nutrient_markers" ] }, { "page": "obesity_indices", "title": "Compute anthropometric obesity & adiposity indices", "topics": [ "obesity_indices" ] }, { "page": "ogtt_is", "title": "Calculate OGTT-based insulin sensitivity indices", "topics": [ "ogtt_is" ] }, { "page": "oxidative_markers", "title": "Oxidative stress markers", "topics": [ "oxidative_markers" ] }, { "page": "phq9_score", "title": "PHQ-9 / PHQ-8 scoring", "topics": [ "phq9_score" ] }, { "page": "plot_frailty_age", "title": "Plot FI vs age (convenience wrapper)", "topics": [ "plot_frailty_age" ] }, { "page": "psych_dx_flags", "title": "Psychiatric diagnosis flags aggregator", "topics": [ "psych_dx_flags" ] }, { "page": "psych_markers", "title": "Psychometric markers dispatcher", "topics": [ "psych_markers" ] }, { "page": "psych_med_flags", "title": "Psychiatric medication flags aggregator", "topics": [ "psych_med_flags" ] }, { "page": "pulmo_markers", "title": "Calculate pulmonary function markers (FEV1/FVC, z-scores, percent predicted, LLN, etc.)", "topics": [ "pulmo_markers" ] }, { "page": "renal_markers", "title": "Calculate a Suite of Renal Function, Injury, and Excretion Markers", "topics": [ "renal_markers" ] }, { "page": "saliva_markers", "title": "Calculate saliva-based stress & glycemic markers", "topics": [ "saliva_markers" ] }, { "page": "sarc_f_score", "title": "SARC-F Sarcopenia Screening Score", "topics": [ "sarc_f_score" ] }, { "page": "spirometry_markers", "title": "Spirometry markers: FEV1/FVC, LLN-based obstruction, GOLD grade, bronchodilator response", "concept": [ "respiratory-markers" ], "topics": [ "spirometry_markers" ] }, { "page": "spq_score", "title": "Schizotypal Personality Questionnaire 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